Publications
Since the BIDC's inception, we have contributed to over 80 peer-reviewed publications. If you have utilized BIDC resources (microscopes, analysis, expertise), please submit the publication to bidc@ucsf.edu to be included in our list. 

  • Cai, En, Kyle Marchuk, Peter Beemiller, Casey Beppler, Matthew G. Rubashkin, Valerie M. Weaver, Audrey Gérard, et al. 2017. “Visualizing Dynamic Microvillar Search and Stabilization during Ligand Detection by T Cells.” Science 356 (6338): eaal3118. [doi:10.1126/science.aal3118].
  • Lefrançais, Emma, Guadalupe Ortiz-Muñoz, Axelle Caudrillier, Beñat Mallavia, Fengchun Liu, David M. Sayah, Emily E. Thornton, et al. 2017. “The Lung Is a Site of Platelet Biogenesis and a Reservoir for Haematopoietic Progenitors.” Nature 544 (7648): 105–9. [doi:10.1038/nature21706].

  • Mujal, Adriana M., Julia K. Gilden, Audrey Gérard, Makoto Kinoshita, and Matthew F. Krummel. 2016. “A Septin Requirement Differentiates Autonomous- and Contact-Facilitated T Cell Proliferation.” Nature Immunology 17 (3): 315–22.[doi:10.1038/ni.3330].
  • Ulmschneider, Bryne, Bree K. Grillo-Hill, Marimar Benitez, Dinara R. Azimova, Diane L. Barber, and Todd G. Nystul. 2016. “Increased Intracellular pH Is Necessary for Adult Epithelial and Embryonic Stem Cell Differentiation.” J Cell Biol 215 (3):345–55. [doi:10.1083/jcb.201606042].
  • Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Royce Ma, Lynne A. Murray, Ping Tsui, et al. 2015. “TGF-β–Dependent Dendritic Cell Chemokinesis in Murine Models of Airway Disease.” The Journal of Immunology 195 (3): 1182–90. [doi:10.4049/jimmunol.1500348].
  • Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Amanda Goodsell, Royce Ma, Catherine Moermans, et al. 2015. “A Critical Role for Dendritic Cells in the Evolution of IL-1β–Mediated Murine Airway Disease.” The Journal of Immunology 194 (8): 3962–69. [doi:10.4049/jimmunol.1403043
  • Van Dyken, Steven J., Alexander Mohapatra, Jesse C. Nussbaum, Ari B. Molofsky, Emily E. Thornton, Steven F. Ziegler, Andrew N. J. McKenzie, Matthew F. Krummel, Hong-Erh Liang, and Richard M. Locksley. 2014. “Chitin Activates Parallel Immune Modules That Direct Distinct Inflammatory Responses via Innate Lymphoid Type 2 and Γδ T Cells.” Immunity 40 (3): 414–24. [doi:10.1016/j.immuni.2014.02.003].
  • Patnode, Michael L., Jennifer K. Bando, Matthew F. Krummel, Richard M. Locksley, and Steven D. Rosen. 2014. “Leukotriene B4 Amplifies Eosinophil Accumulation in Response to Nematodes.” Journal of Experimental Medicine 211 (7): 1281–88. [doi:10.1084/jem.20132336].
  • Nussbaum, Jesse C., Steven J. Van Dyken, Jakob von Moltke, Laurence E. Cheng, Alexander Mohapatra, Ari B. Molofsky, Emily E. Thornton, et al. 2013. “Type 2 Innate Lymphoid Cells Control Eosinophil Homeostasis.” Nature 502 (7470): 245–48. [doi:10.1038/nature12526].
  • Jacobelli, Jordan, Miriam Estin Matthews, Stephanie Chen, and Matthew F. Krummel. 2013. “Activated T Cell Trans-Endothelial Migration Relies on Myosin-IIA Contractility for Squeezing the Cell Nucleus through Endothelial Cell Barriers.” PLOS ONE 8 (9): e75151. [doi:10.1371/journal.pone.0075151].
  • Phillips, Joanna J., Emmanuelle Huillard, Aaron E. Robinson, Anna Ward, David H. Lum, Mei-Yin Polley, Steven D. Rosen, David H. Rowitch, and Zena Werb. 2012. “Heparan Sulfate Sulfatase SULF2 Regulates PDGFRα Signaling and Growth in Human and Mouse Malignant Glioma.” The Journal of Clinical Investigation 122 (3): 911–22. [doi:10.1172/JCI58215].
  • Gilden, Julia K., Sebastian Peck, Yi-Chun M. Chen, and Matthew F. Krummel. 2012. “The Septin Cytoskeleton Facilitates Membrane Retraction during Motility and Blebbing.” J Cell Biol 196 (1): 103–14. [doi:10.1083/jcb.201105127].
  • Lemieux, George A., Jason Liu, Nasima Mayer, Roland J. Bainton, Kaveh Ashrafi, and Zena Werb. 2011. “A Whole-Organism Screen Identifies New Regulators of Fat Storage.” Nature Chemical Biology 7 (4): 206–13. [doi:10.1038/nchembio.534].
  • Slorach, Euan M., Jonathan Chou, and Zena Werb. 2011. “Zeppo1 Is a Novel Metastasis Promoter That Represses E-Cadherin Expression and Regulates p120-Catenin Isoform Expression and Localization.” Genes & Development 25 (5): 471–84. [doi:10.1101/gad.1998111].
  • Radoshevich, Lilliana, Lyndsay Murrow, Nan Chen, Estefania Fernandez, Srirupa Roy, Christopher Fung, and Jayanta Debnath. 2010. “ATG12 Conjugation to ATG3 Regulates Mitochondrial Homeostasis and Cell Death.” Cell 142 (4): 590–600. [doi:10.1016/j.cell.2010.07.018].
  • Jacobelli, Jordan, Rachel S. Friedman, Mary Anne Conti, Ana-Maria Lennon-Dumenil, Matthieu Piel, Caitlin M. Sorensen, Robert S. Adelstein, and Matthew F. Krummel. 2010. “Confinement-Optimized 3-Dimensional T Cell Amoeboid Motility Is Modulated via Myosin IIA-Regulated Adhesions.” Nature Immunology 11 (10): 953–61. [doi:10.1038/ni.1936].
  • Youn, Yong Ha, Tiziano Pramparo, Shinji Hirotsune, and Anthony Wynshaw-Boris. 2009. “Distinct Dose-Dependent Cortical Neuronal Migration and Neurite Extension Defects in Lis1 and Ndel1 Mutant Mice.” Journal of Neuroscience 29 (49): 15520–30. [doi:10.1523/JNEUROSCI.4630-09.2009].
  • Melli, Kristin, Rachel S. Friedman, Ashley E. Martin, Erik B. Finger, Gang Miao, Gregory L. Szot, Matthew F. Krummel, and Qizhi Tang. 2009. “Amplification of Autoimmune Response through Induction of Dendritic Cell Maturation in Inflamed Tissues.” The Journal of Immunology 182 (5): 2590–2600. [doi:10.4049/jimmunol.0803543].
  • Gardner, James M., Jason J. DeVoss, Rachel S. Friedman, David J. Wong, Ying X. Tan, Xuyu Zhou, Kellsey P. Johannes, et al. 2008. “Deletional Tolerance Mediated by Extrathymic Aire-Expressing Cells.” Science 321 (5890): 843–47. [doi:10.1126/science.1159407].
  • Allen, Christopher D C, and Jason G Cyster. 2008. “Follicular Dendritic Cell Networks of Primary Follicles and Germinal Centers: Phenotype and Function.” Seminars in Immunology 20 (1): 14–25. [doi:10.1016/j.smim.2007.12.001].
  • Allen, Christopher D. C., Takaharu Okada, H. Lucy Tang, and Jason G. Cyster. 2007. “Imaging of Germinal Center Selection Events During Affinity Maturation.” Science 315 (5811): 528–31. [doi:10.1126/science.1136736].
  • Woolf, Eilon, Irina Grigorova, Adi Sagiv, Valentin Grabovsky, Sara W. Feigelson, Ziv Shulman, Tanja Hartmann, Michael Sixt, Jason G. Cyster, and Ronen Alon. 2007. “Lymph Node Chemokines Promote Sustained T Lymphocyte Motility without Triggering Stable Integrin Adhesiveness in the Absence of Shear Forces.” Nature Immunology 8 (10): 1076–85. [doi:10.1038/ni1499].
  • Tang, Qizhi, and Matthew F Krummel. 2006. “Imaging the Function of Regulatory T Cells in Vivo.” Current Opinion in Immunology, Host–pathogen interactions / Immunological techniques, 18 (4): 496–502. [doi:10.1016/j.coi.2006.05.007].
  • Tang, Qizhi, Jason Y. Adams, Aaron J. Tooley, Mingying Bi, Brian T. Fife, Pau Serra, Pere Santamaria, Richard M. Locksley, Matthew F. Krummel, and Jeffrey A. Bluestone. 2006. “Visualizing Regulatory T Cell Control of Autoimmune Responses in Nonobese Diabetic Mice.” Nature Immunology 7 (1): 83–92. [doi:10.1038/ni1289].
  • Friedman, Rachel S., Jordan Jacobelli, and Matthew F. Krummel. 2005. “Mechanisms of T Cell Motility and Arrest: Deciphering the Relationship between Intra- and Extracellular Determinants.” Seminars in Immunology 17 (6): 387–99. [doi:10.1016/j.smim.2005.09.006].
  • Okada, Takaharu, Mark J Miller, Ian Parker, Matthew F Krummel, Margaret Neighbors, Suzanne B Hartley, Anne O’Garra, Michael D Cahalan, and Jason G Cyster. 2005. “Antigen-Engaged B Cells Undergo Chemotaxis toward the T Zone and Form Motile Conjugates with Helper T Cells.” PLoS Biology 3 (6). [doi:10.1371/journal.pbio.0030150].