Publications
Since the BIDC's inception, we have contributed to over 80 peer-reviewed publications. If you have utilized BIDC resources (microscopes, analysis, expertise), please submit the publication to bidc@ucsf.edu to be included in our list. 

  1. Cai, En, Kyle Marchuk, Peter Beemiller, Casey Beppler, Matthew G. Rubashkin, Valerie M. Weaver, Audrey Gérard, et al. 2017. “Visualizing Dynamic Microvillar Search and Stabilization during Ligand Detection by T Cells.” Science 356 (6338): eaal3118. [doi:10.1126/science.aal3118].
  2. Lefrançais, Emma, Guadalupe Ortiz-Muñoz, Axelle Caudrillier, Beñat Mallavia, Fengchun Liu, David M. Sayah, Emily E. Thornton, et al. 2017. “The Lung Is a Site of Platelet Biogenesis and a Reservoir for Haematopoietic Progenitors.” Nature 544 (7648): 105–9. [doi:10.1038/nature21706].
  3. Ulmschneider, Bryne, Bree K. Grillo-Hill, Marimar Benitez, Dinara R. Azimova, Diane L. Barber, and Todd G. Nystul. 2016. “Increased Intracellular pH Is Necessary for Adult Epithelial and Embryonic Stem Cell Differentiation.” J Cell Biol 215 (3):345–55. [doi:10.1083/jcb.201606042].
  4. Johnston, Michael J., Shaked Bar-Cohen, Ze ’ev Paroush, and Todd G. Nystul. 2016. “Phosphorylated Groucho Delays Differentiation in the Follicle Stem Cell Lineage by Providing a Molecular Memory of EGFR Signaling in the Niche.” Development 143 (24):4631–42. [doi: 10.1242/dev.143263].
  5. Lefrançais, Emma, Beñat Mallavia, and Mark R. Looney. 2016. “Lung Imaging in Animal Models.” In Acute Lung Injury and Repair, edited by Lynn M. Schnapp and Carol Feghali-Bostwick, 107–32. Respiratory Medicine. Springer International Publishing. [doi:10.1007/978-3-319-46527-2_8].
  6. Sen, Debasish, Stephen M. Jones, Erin M. Oswald, Henry Pinkard, Kaitlin Corbin, and Matthew F. Krummel. 2016. “Tracking the Spatial and Functional Gradient of Monocyte-To-Macrophage Differentiation in Inflamed Lung.” PLOS ONE 11 (10): e0165064. [doi:10.1371/journal.pone.0165064].
  7. Pinkard, Henry, Kaitlin Corbin, and Matthew F. Krummel. 2016. “Spatiotemporal Rank Filtering Improves Image Quality Compared to Frame Averaging in 2-Photon Laser Scanning Microscopy.” PLOS ONE 11 (3): e0150430. [doi:10.1371/journal.pone.0150430].
  8. Pinkard, Henry, Nico Stuurman, Kaitlin Corbin, Ronald Vale, and Matthew F. Krummel. 2016. “Micro-Magellan: Open-Source, Sample-Adaptive, Acquisition Software for Optical Microscopy.” Nature Methods 13 (10): 807–9. [doi:10.1038/nmeth.3991].
  9. Arora, Ripla, Adam Fries, Karina Oelerich, Kyle Marchuk, Khalida Sabeur, Linda C. Giudice, and Diana J. Laird. 2016. “Insights from Imaging the Implanting Embryo and the Uterine Environment in Three Dimensions.” Development 143 (24): 4749–54. [doi:10.1242/dev.144386].
  10. Rys, Joanna P, Christopher C DuFort, David A Monteiro, Michelle A Baird, Juan A Oses-Prieto, Shreya Chand, Alma L Burlingame, Michael W Davidson, and Tamara N Alliston. 2015. “Discrete Spatial Organization of TGFβ Receptors Couples Receptor Multimerization and Signaling to Cellular Tension.” eLife 4. Accessed January 5. [doi:10.7554/eLife.09300].
  11. Prochazka, Jan, Michaela Prochazkova, Wen Du, Frantisek Spoutil, Jolana Tureckova, Renee Hoch, Tomomi Shimogori, et al. 2015. “Migration of Founder Epithelial Cells Drives Proper Molar Tooth Positioning and Morphogenesis.” Developmental Cell 35 (6): 713–24. [doi:10.1016/j.devcel.2015.11.025].
  12. Vlachos, Stephanie, Sharayu Jangam, Ryan Conder, Michael Chou, Todd Nystul, and Nicholas Harden. 2015. “A Pak-Regulated Cell Intercalation Event Leading to a Novel Radial Cell Polarity Is Involved in Positioning of the Follicle Stem Cell Niche in the Drosophila Ovary.” Development 142 (1): 82–91. [doi:10.1242/dev.111039].
  13. Hahn, Junghyun, Xianhong Wang, and Marta Margeta. 2015. “Astrocytes Increase the Activity of Synaptic GluN2B NMDA Receptors.” Frontiers in Cellular Neuroscience 9. [doi:10.3389/fncel.2015.00117].
  14. Faire, Mehlika, Amanda Skillern, Ripla Arora, Daniel H. Nguyen, Jason Wang, Chester Chamberlain, Michael S. German, Jennifer C. Fung, and Diana J. Laird. 2015. “Follicle Dynamics and Global Organization in the Intact Mouse Ovary.” Developmental Biology 403 (1): 69–79. [doi:10.1016/j.ydbio.2015.04.006].
  15. Matheu, Melanie P., Shivashankar Othy, Milton L. Greenberg, Tobias X. Dong, Martijn Schuijs, Kim Deswarte, Hamida Hammad, Bart N. Lambrecht, Ian Parker, and Michael D. Cahalan. 2015. “Imaging Regulatory T Cell Dynamics and CTLA4-Mediated Suppression of T Cell Priming.” Nature Communications 6 (February): 6219. [doi:10.1038/ncomms7219].
  16. Grillo-Hill, Bree K., Changhoon Choi, Maite Jimenez-Vidal, and Diane L. Barber. 2015. “Increased H+ Efflux Is Sufficient to Induce Dysplasia and Necessary for Viability with Oncogene Expression.” eLife 4 (March): e03270. [doi:10.7554/eLife.03270].
  17. Molofsky, Ari B., Frédéric Van Gool, Hong-Erh Liang, Steven J. Van Dyken, Jesse C. Nussbaum, Jinwoo Lee, Jeffrey A. Bluestone, and Richard M. Locksley. 2015. “Interleukin-33 and Interferon-γ Counter-Regulate Group 2 Innate Lymphoid Cell Activation during Immune Perturbation.” Immunity 43 (1): 161–74. [doi:10.1016/j.immuni.2015.05.019].
  18. Cheng, Laurence E., Brandon M. Sullivan, Lizett E. Retana, Christopher D. C. Allen, Hong-Erh Liang, and Richard M. Locksley. 2015. “IgE-Activated Basophils Regulate Eosinophil Tissue Entry by Modulating Endothelial Function.” Journal of Experimental Medicine 212 (4): 513–24. [doi:10.1084/jem.20141671].
  19. Mujal, Adriana M., Julia K. Gilden, Audrey Gérard, Makoto Kinoshita, and Matthew F. Krummel. 2016. “A Septin Requirement Differentiates Autonomous- and Contact-Facilitated T Cell Proliferation.” Nature Immunology 17 (3): 315–22. [doi:10.1038/ni.3330].
  20. Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Royce Ma, Lynne A. Murray, Ping Tsui, et al. 2015. “TGF-β–Dependent Dendritic Cell Chemokinesis in Murine Models of Airway Disease.” The Journal of Immunology 195 (3): 1182–90. [doi:10.4049/jimmunol.1500348].
  21. Hashimoto, Mitsuo, Haruhiko Yanagisawa, Shunsuke Minagawa, Debasish Sen, Amanda Goodsell, Royce Ma, Catherine Moermans, et al. 2015. “A Critical Role for Dendritic Cells in the Evolution of IL-1β–Mediated Murine Airway Disease.” The Journal of Immunology 194 (8): 3962–69. [doi:10.4049/jimmunol.1403043].
  22. Bose, Oishee, Peter Baluk, Mark R. Looney, Laurence E. Cheng, Donald M. McDonald, George H. Caughey, and Matthew F. Krummel. 2015. “Mast Cells Present Protrusions into Blood Vessels upon Tracheal Allergen Challenge in Mice.” PLoS ONE 10 (3). [doi:10.1371/journal.pone.0118513].
  23. Cassereau, Luke, Yekaterina A. Miroshnikova, Guanqing Ou, Johnathon Lakins, and Valerie M. Weaver. 2015. “A 3D Tension Bioreactor Platform to Study the Interplay between ECM Stiffness and Tumor Phenotype.” Journal of Biotechnology 193 (January): 66–69. [doi:10.1016/j.jbiotec.2014.11.008].
  24. Corbin, Kaitlin, Henry Pinkard, Sebastian Peck, Peter Beemiller, and Matthew F. Krummel. 2014. “Assessing and Benchmarking Multiphoton Microscopes for Biologists.” In Methods in Cell Biology, edited by Jennifer C. Waters and Torsten Wittman, 123:135–51. Quantitative Imaging in Cell Biology. Academic Press. [doi:10.1016/B9780124201385000082].
  25. Lindsay, Robin S., Kaitlin Corbin, Ashley Mahne, Bonnie E. Levitt, Matthew J. Gebert, Eric J. Wigton, Brenda J. Bradley, et al. 2015. “Antigen Recognition in the Islets Changes with Progression of Autoimmune Islet Infiltration.” The Journal of Immunology 194 (2): 522–30. [doi:10.4049/jimmunol.1400626].
  26. Vaughan, Andrew E., Alexis N. Brumwell, Ying Xi, Jeffrey E. Gotts, Doug G. Brownfield, Barbara Treutlein, Kevin Tan, et al. 2015. “Lineage-Negative Progenitors Mobilize to Regenerate Lung Epithelium after Major Injury.” Nature 517 (7536): 621–25. [doi:10.1038/nature14112].
  27. Van Dyken, Steven J., Alexander Mohapatra, Jesse C. Nussbaum, Ari B. Molofsky, Emily E. Thornton, Steven F. Ziegler, Andrew N. J. McKenzie, Matthew F. Krummel, Hong-Erh Liang, and Richard M. Locksley. 2014. “Chitin Activates Parallel Immune Modules That Direct Distinct Inflammatory Responses via Innate Lymphoid Type 2 and Γδ T Cells.” Immunity 40 (3): 414–24. [doi:10.1016/j.immuni.2014.02.003].
  28. Patnode, Michael L., Jennifer K. Bando, Matthew F. Krummel, Richard M. Locksley, and Steven D. Rosen. 2014. “Leukotriene B4 Amplifies Eosinophil Accumulation in Response to Nematodes.” Journal of Experimental Medicine 211 (7): 1281–88. [doi:10.1084/jem.20132336].
  29. Galmozzi, Andrea, Si B. Sonne, Svetlana Keylin, Yutaka Hasegawa, Kosaku Shinoda, Ineke H. N. Luijten, Jae Won Chang, et al. 2014. “ThermoMouse: An in Vivo Model to Identify Modulators of UCP1 Expression in Brown Adipose Tissue.” Cell Reports 9 (5): 1584–93. [doi:10.1016/j.celrep.2014.10.066].
  30. Gérard, Audrey, Genaro Patino-Lopez, Peter Beemiller, Rajalakshmi Nambiar, Khadija Ben-Aissa, Yin Liu, Fadi J. Totah, Matthew J. Tyska, Stephen Shaw, and Matthew F. Krummel. 2014. “Detection of Rare Antigen-Presenting Cells through T Cell-Intrinsic Meandering Motility, Mediated by Myo1g.” Cell 158 (3): 492–505. [doi:10.1016/j.cell.2014.05.044].
  31. Castanieto, Angela, Michael J. Johnston, and Todd G. Nystul. 2014. “EGFR Signaling Promotes Self-Renewal through the Establishment of Cell Polarity in Drosophila Follicle Stem Cells.” eLife 3 (December): e04437. [doi:10.7554/eLife.04437].
  32. Broz, Miranda L., Mikhail Binnewies, Bijan Boldajipour, Amanda E. Nelson, Joshua L. Pollack, David J. Erle, Andrea Barczak, et al. 2014. “Dissecting the Tumor Myeloid Compartment Reveals Rare Activating Antigen-Presenting Cells Critical for T Cell Immunity.” Cancer Cell 26 (5): 638–52. [doi:10.1016/j.ccell.2014.09.007].
  33. Lelkes, E., M.B. Headley, E.E. Thornton, M.R. Looney, and M.F. Krummel. 2014. “The Spatiotemporal Cellular Dynamics of Lung Immunity.” Trends in Immunology 35 (8): 379–86. [doi:10.1016/j.it.2014.05.005].
  34. Stehbens, Samantha J., Matthew Paszek, Hayley Pemble, Andreas Ettinger, Sarah Gierke, and Torsten Wittmann. 2014. “CLASPs Link Focal-Adhesion-Associated Microtubule Capture to Localized Exocytosis and Adhesion Site Turnover.” Nature Cell Biology 16 (6): 558–70. [doi:10.1038/ncb2975].
  35. Ortiz-Muñoz, Guadalupe, Beñat Mallavia, Adriaan Bins, Mark Headley, Matthew F. Krummel, and Mark R. Looney. 2014. “Aspirin-Triggered 15-Epi-Lipoxin A4 Regulates Neutrophil-Platelet Aggregation and Attenuates Acute Lung Injury in Mice.” Blood 124 (17): 2625–34. [doi:10.1182/blood-2014-03-562876].
  36. Moon, Hyang Mi, Yong Ha Youn, Hayley Pemble, Jessica Yingling, Torsten Wittmann, and Anthony Wynshaw-Boris. 2014. “LIS1 Controls Mitosis and Mitotic Spindle Organization via the LIS1–NDEL1–dynein Complex.” Human Molecular Genetics 23 (2): 449–66. [doi:10.1093/hmg/ddt436].
  37. Looney, Mark R., and Jahar Bhattacharya. 2014. “Live Imaging of the Lung.” Annual Review of Physiology 76 (1): 431–45. [doi:10.1146/annurev-physiol-021113-170331].
  38. Nussbaum, Jesse C., Steven J. Van Dyken, Jakob von Moltke, Laurence E. Cheng, Alexander Mohapatra, Ari B. Molofsky, Emily E. Thornton, et al. 2013. “Type 2 Innate Lymphoid Cells Control Eosinophil Homeostasis.” Nature 502 (7470): 245–48. [doi:10.1038/nature12526].
  39. Jacobelli, Jordan, Miriam Estin Matthews, Stephanie Chen, and Matthew F. Krummel. 2013. “Activated T Cell Trans-Endothelial Migration Relies on Myosin-IIA Contractility for Squeezing the Cell Nucleus through Endothelial Cell Barriers.” PLOS ONE 8 (9): e75151. [doi:10.1371/journal.pone.0075151].
  40. Gérard, Audrey, Omar Khan, Peter Beemiller, Erin Oswald, Joyce Hu, Mehrdad Matloubian, and Matthew F. Krummel. 2013. “Secondary T Cell-T Cell Synaptic Interactions Drive the Differentiation of Protective CD8+ T Cells.” Nature Immunology 14 (4): 356–63. [doi:10.1038/ni.2547].
  41. Cheng, Laurence E., Karin Hartmann, Axel Roers, Matthew F. Krummel, and Richard M. Locksley. 2013. “Perivascular Mast Cells Dynamically Probe Cutaneous Blood Vessels to Capture Immunoglobulin E.” Immunity 38 (1): 166–75. [doi:10.1016/j.immuni.2012.09.022].
  42. Phillips, Joanna J., Emmanuelle Huillard, Aaron E. Robinson, Anna Ward, David H. Lum, Mei-Yin Polley, Steven D. Rosen, David H. Rowitch, and Zena Werb. 2012. “Heparan Sulfate Sulfatase SULF2 Regulates PDGFRα Signaling and Growth in Human and Mouse Malignant Glioma.” The Journal of Clinical Investigation 122 (3): 911–22. [doi:10.1172/JCI58215].
  43. Gilden, Julia K., Sebastian Peck, Yi-Chun M. Chen, and Matthew F. Krummel. 2012. “The Septin Cytoskeleton Facilitates Membrane Retraction during Motility and Blebbing.” J Cell Biol 196 (1): 103–14. [doi:10.1083/jcb.201105127].
  44. Engelhardt, John J., Bijan Boldajipour, Peter Beemiller, Priya Pandurangi, Caitlin Sorensen, Zena Werb, Mikala Egeblad, and Matthew F. Krummel. 2012. “Marginating Dendritic Cells of the Tumor Microenvironment Cross-Present Tumor Antigens and Stably Engage Tumor-Specific T Cells.” Cancer Cell 21 (3): 402–17. [doi:10.1016/j.ccr.2012.01.008].
  45. Thornton, Emily E., Matthew F. Krummel, and Mark R. Looney. 2012. “Live Imaging of the Lung.” In Current Protocols in Cytometry. John Wiley & Sons, Inc. [doi:10.1002/0471142956.cy1228s60].
  46. Thornton, Emily E., Mark R. Looney, Oishee Bose, Debasish Sen, Dean Sheppard, Richard Locksley, Xiaozhu Huang, and Matthew F. Krummel. 2012. “Spatiotemporally Separated Antigen Uptake by Alveolar Dendritic Cells and Airway Presentation to T Cells in the Lung.” Journal of Experimental Medicine 209 (6): 1183–99. [doi:10.1084/jem.20112667].
  47. Beemiller, Peter, Jordan Jacobelli, and Matthew F. Krummel. 2012. “Integration of the Movement of Signaling Microclusters with Cellular Motility in Immunological Synapses.” Nature Immunology 13 (8): 787–95. [doi:10.1038/ni.2364].
  48. Caudrillier, Axelle, Kai Kessenbrock, Brian M. Gilliss, John X. Nguyen, Marisa B. Marques, Marc Monestier, Pearl Toy, Zena Werb, and Mark R. Looney. 2012. “Platelets Induce Neutrophil Extracellular Traps in Transfusion-Related Acute Lung Injury.” The Journal of Clinical Investigation 122 (7): 2661–71. [doi:10.1172/JCI61303].
  49. Zhang, Yafeng, Yi-Chun Maria Chen, Matthew F. Krummel, and Steven D. Rosen. 2012. “Autotaxin through Lysophosphatidic Acid Stimulates Polarization, Motility, and Transendothelial Migration of Naive T Cells.” The Journal of Immunology 189 (8): 3914–24. [doi:10.4049/jimmunol.1201604].
  50. Paszek, Matthew J., Christopher C. DuFort, Matthew G. Rubashkin, Michael W. Davidson, Kurt S. Thorn, Jan T. Liphardt, and Valerie M. Weaver. 2012. “Scanning Angle Interference Microscopy Reveals Cell Dynamics at the Nanoscale.” Nature Methods 9 (8): 825–27. [doi:10.1038/nmeth.2077].
  51. Lemieux, George A., Jason Liu, Nasima Mayer, Roland J. Bainton, Kaveh Ashrafi, and Zena Werb. 2011. “A Whole-Organism Screen Identifies New Regulators of Fat Storage.” Nature Chemical Biology 7 (4): 206–13. [doi:10.1038/nchembio.534].
  52. Slorach, Euan M., Jonathan Chou, and Zena Werb. 2011. “Zeppo1 Is a Novel Metastasis Promoter That Represses E-Cadherin Expression and Regulates p120-Catenin Isoform Expression and Localization.” Genes & Development 25 (5): 471–84. [doi:10.1101/gad.1998111].
  53. Wang, Xiaoyin, Junya Takagawa, Viola C. Lam, Daniel J. Haddad, Diana L. Tobler, Pamela Y. Mok, Yan Zhang, et al. 2011. “Donor Myocardial Infarction Impairs the Therapeutic Potential of Bone Marrow Cells by an Interleukin-1–Mediated Inflammatory Response.” Science Translational Medicine 3 (100): 100ra90-100ra90. [doi:10.1126/scitranslmed.3002814].
  54. Pramparo, Tiziano, Ondrej Libiger, Sonia Jain, Hong Li, Yong Ha Youn, Shinji Hirotsune, Nicholas J. Schork, and Anthony Wynshaw-Boris. 2011. “Global Developmental Gene Expression and Pathway Analysis of Normal Brain Development and Mouse Models of Human Neuronal Migration Defects.” PLOS Genetics 7 (3): e1001331. [doi:10.1371/journal.pgen.1001331].
  55. Looney, Mark R., Emily E. Thornton, Debasish Sen, Wayne J. Lamm, Robb W. Glenny, and Matthew F. Krummel. 2011. “Stabilized Imaging of Immune Surveillance in the Mouse Lung.” Nature Methods 8 (1): 91–96. [doi:10.1038/nmeth.1543].
  56. Radoshevich, Lilliana, Lyndsay Murrow, Nan Chen, Estefania Fernandez, Srirupa Roy, Christopher Fung, and Jayanta Debnath. 2010. “ATG12 Conjugation to ATG3 Regulates Mitochondrial Homeostasis and Cell Death.” Cell 142 (4): 590–600. [doi:10.1016/j.cell.2010.07.018].
  57. Jacobelli, Jordan, Rachel S. Friedman, Mary Anne Conti, Ana-Maria Lennon-Dumenil, Matthieu Piel, Caitlin M. Sorensen, Robert S. Adelstein, and Matthew F. Krummel. 2010. “Confinement-Optimized 3-Dimensional T Cell Amoeboid Motility Is Modulated via Myosin IIA-Regulated Adhesions.” Nature Immunology 11 (10): 953–61. [doi:10.1038/ni.1936].
  58. Hippenmeyer, Simon, Yong Ha Youn, Hyang Mi Moon, Kazunari Miyamichi, Hui Zong, Anthony Wynshaw-Boris, and Liqun Luo. 2010. “Genetic Mosaic Dissection of Lis1 and Ndel1 in Neuronal Migration.” Neuron 68 (4): 695–709. [doi:10.1016/j.neuron.2010.09.027].
  59. Pramparo, Tiziano, Yong Ha Youn, Jessica Yingling, Shinji Hirotsune, and Anthony Wynshaw-Boris. 2010. “Novel Embryonic Neuronal Migration and Proliferation Defects in Dcx Mutant Mice Are Exacerbated by Lis1 Reduction.” The Journal of Neuroscience : The Official Journal of the Society for Neuroscience 30 (8): 3002–12. [doi:10.1523/JNEUROSCI.4851-09.2010].
  60. Hashimoto, Masakazu, Kyosuke Shinohara, Jianbo Wang, Shingo Ikeuchi, Satoko Yoshiba, Chikara Meno, Shigenori Nonaka, et al. 2010. “Planar Polarization of Node Cells Determines the Rotational Axis of Node Cilia.” Nature Cell Biology 12 (2): 170–76. [doi:10.1038/ncb2020].
  61. Beemiller, Peter, and Matthew F. Krummel. 2010. “Mediation of T-Cell Activation by Actin Meshworks.” Cold Spring Harbor Perspectives in Biology 2 (9): a002444. [doi:10.1101/cshperspect.a002444].
  62. Katzman, Shoshana D., William E. O’Gorman, Alejandro V. Villarino, Eugenio Gallo, Rachel S. Friedman, Matthew F. Krummel, Garry P. Nolan, and Abul K. Abbas. 2010. “Duration of Antigen Receptor Signaling Determines T-Cell Tolerance or Activation.” Proceedings of the National Academy of Sciences 107 (42): 18085–90. [doi:10.1073/pnas.1010560107].
  63. Friedman, Rachel S., Peter Beemiller, Caitlin M. Sorensen, Jordan Jacobelli, and Matthew F. Krummel. 2010. “Real-Time Analysis of T Cell Receptors in Naive Cells in Vitro and in Vivo Reveals Flexibility in Synapse and Signaling Dynamics.” The Journal of Experimental Medicine 207 (12): 2733–49. [doi:10.1084/jem.20091201].
  64. Chen, Ying-Ting, Karina Nikulina, Stanislav Lazarev, Ahmad F. Bahrami, Lisa B. Noble, Marianne Gallup, and Nancy A. McNamara. 2010. “Interleukin-1 as a Phenotypic Immunomodulator in Keratinizing Squamous Metaplasia of the Ocular Surface in Sjögren’s Syndrome.” The American Journal of Pathology 177 (3): 1333–43. [doi:10.2353/ajpath.2010.100227].
  65. Chen, Ying-Ting, Marianne Gallup, Karina Nikulina, Stanislav Lazarev, Lorna Zlock, Walter Finkbeiner, and Nancy McNamara. 2010. “Cigarette Smoke Induces Epidermal Growth Factor Receptor-Dependent Redistribution of Apical MUC1 and Junctional β-Catenin in Polarized Human Airway Epithelial Cells.” The American Journal of Pathology 177 (3): 1255–64. [doi:10.2353/ajpath.2010.091129].
  66. Doh, Junsang, and Matthew F. Krummel. 2010. “Immunological Synapses Within Context: Patterns of Cell–Cell Communication and Their Application in T–T Interactions.” In Immunological Synapse, edited by Takashi Saito and Facundo D. Batista, 25–50. Current Topics in Microbiology and Immunology 340. Springer Berlin Heidelberg. [doi:10.1007/978-3-642-03858-7_2].
  67. Doh, Junsang, Miju Kim, and Matthew F. Krummel. 2010. “Cell-Laden Microwells for the Study of Multicellularity in Lymphocyte Fate Decisions.” Biomaterials 31 (12): 3422–28. [doi:10.1016/j.biomaterials.2010.01.018].
  68. Phan, Tri Giang, and Andrew Bullen. 2010. “Practical Intravital Two-Photon Microscopy for Immunological Research: Faster, Brighter, Deeper.” Immunology and Cell Biology 88 (4): 438–44. [doi:10.1038/icb.2009.116].
  69. Pham, Trung H. M., Peter Baluk, Ying Xu, Irina Grigorova, Alex J. Bankovich, Rajita Pappu, Shaun R. Coughlin, Donald M. McDonald, Susan R. Schwab, and Jason G. Cyster. 2010. “Lymphatic Endothelial Cell Sphingosine Kinase Activity Is Required for Lymphocyte Egress and Lymphatic Patterning.” Journal of Experimental Medicine 207 (1): 17–27. [doi:10.1084/jem.20091619].
  70. Youn, Yong Ha, Tiziano Pramparo, Shinji Hirotsune, and Anthony Wynshaw-Boris. 2009. “Distinct Dose-Dependent Cortical Neuronal Migration and Neurite Extension Defects in Lis1 and Ndel1 Mutant Mice.” Journal of Neuroscience 29 (49): 15520–30. [doi:10.1523/JNEUROSCI.4630-09.2009].
  71. Melli, Kristin, Rachel S. Friedman, Ashley E. Martin, Erik B. Finger, Gang Miao, Gregory L. Szot, Matthew F. Krummel, and Qizhi Tang. 2009. “Amplification of Autoimmune Response through Induction of Dendritic Cell Maturation in Inflamed Tissues.” The Journal of Immunology 182 (5): 2590–2600. [doi:10.4049/jimmunol.0803543].
  72. Suzuki, Kazuhiro, Irina Grigorova, Tri Giang Phan, Lisa M. Kelly, and Jason G. Cyster. 2009. “Visualizing B Cell Capture of Cognate Antigen from Follicular Dendritic Cells.” Journal of Experimental Medicine 206 (7): 1485–93. [doi:10.1084/jem.20090209].
  73. Phan, Tri Giang, Jesse A. Green, Elizabeth E. Gray, Ying Xu, and Jason G. Cyster. 2009. “Immune Complex Relay by Subcapsular Sinus Macrophages and Noncognate B Cells Drives Antibody Affinity Maturation.” Nature Immunology 10 (7): 786–93. [doi:10.1038/ni.1745].
  74. Bullen, Andrew, Rachel S. Friedman, and Matthew F. Krummel. 2009. “Two-Photon Imaging of the Immune System: A Custom Technology Platform for High-Speed, Multicolor Tissue Imaging of Immune Responses.” In Visualizing Immunity, edited by Michael Dustin and Dorian McGavern, 1–29. Current Topics in Microbiology and Immunology 334. Springer Berlin Heidelberg. [doi: 10.1007/978-3-540-93864-4_1].
  75. Fife, Brian T., Kristen E. Pauken, Todd N. Eagar, Takashi Obu, Jenny Wu, Qizhi Tang, Miyuki Azuma, Matthew F. Krummel, and Jeffrey A. Bluestone. 2009. “Interactions between PD-1 and PD-L1 Promote Tolerance by Blocking the TCR–induced Stop Signal.” Nature Immunology 10 (11): 1185–92. [doi:10.1038/ni.1790].
  76. Pham, Trung H. M., Takaharu Okada, Mehrdad Matloubian, Charles G. Lo, and Jason G. Cyster. 2008. “S1P1 Receptor Signaling Overrides Retention Mediated by Gαi-Coupled Receptors to Promote T Cell Egress.” Immunity 28 (1): 122–33. [doi:10.1016/j.immuni.2007.11.017].
  77. Grigorova, Irina L., Susan R. Schwab, Tri Giang Phan, Trung H. M. Pham, Takaharu Okada, and Jason G. Cyster. 2009. “Cortical Sinus Probing, S1P1-Dependent Entry and Flow-Based Capture of Egressing T Cells.” Nature Immunology 10 (1): 58–65. [doi:10.1038/ni.1682].
  78. Gardner, James M., Jason J. DeVoss, Rachel S. Friedman, David J. Wong, Ying X. Tan, Xuyu Zhou, Kellsey P. Johannes, et al. 2008. “Deletional Tolerance Mediated by Extrathymic Aire-Expressing Cells.” Science 321 (5890): 843–47. [doi:10.1126/science.1159407].
  79. Allen, Christopher D C, and Jason G Cyster. 2008. “Follicular Dendritic Cell Networks of Primary Follicles and Germinal Centers: Phenotype and Function.” Seminars in Immunology 20 (1): 14–25. [doi:10.1016/j.smim.2007.12.001].
  80. Sabatos, Catherine A., Junsang Doh, Sumone Chakravarti, Rachel S. Friedman, Priya G. Pandurangi, Aaron J. Tooley, and Matthew F. Krummel. 2008. “A Synaptic Basis for Paracrine Interleukin-2 Signaling during Homotypic T Cell Interaction.” Immunity 29 (2): 238–48. [doi:10.1016/j.immuni.2008.05.017].
  81. Allen, Christopher D. C., Takaharu Okada, H. Lucy Tang, and Jason G. Cyster. 2007. “Imaging of Germinal Center Selection Events During Affinity Maturation.” Science 315 (5811): 528–31. [doi:10.1126/science.1136736].
  82. Woolf, Eilon, Irina Grigorova, Adi Sagiv, Valentin Grabovsky, Sara W. Feigelson, Ziv Shulman, Tanja Hartmann, Michael Sixt, Jason G. Cyster, and Ronen Alon. 2007. “Lymph Node Chemokines Promote Sustained T Lymphocyte Motility without Triggering Stable Integrin Adhesiveness in the Absence of Shear Forces.” Nature Immunology 8 (10): 1076–85. [doi:10.1038/ni1499].
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